refactor: consolidate dotfiles into declarative Nix modules

- Remove nvim git submodule, use flake input instead
- Inline all shell configurations into Nix modules
- Remove legacy bootstrap.sh and macos/macos script
- Add NixOS system configuration support
- Update documentation with platform-specific setup
- Add claude-code to macOS Homebrew
- Remove stow-based dotfile management approach

1 files changed, 0 insertions, 178 deletions

diff --git a/apps/Brewfile b/apps/Brewfile
deleted file mode 100644
index 9290df6..0000000
--- a/apps/Brewfile
+++ /dev/null
@@ -1,178 +0,0 @@
-# Taps
-tap "bramstein/webfonttools"           # Tools for working with web fonts
-tap "homebrew/cask-drivers"            # Tap for cask drivers
-tap "danielgtaylor/restish"            # REST API client
-tap "oven-sh/bun"                      # Bun JavaScript runtime
-tap "pulumi/tap"                       # Pulumi infrastructure as code tools
-tap "go-task/tap"                      # Task runner for Go
-tap "tursodatabase/tap"                # Turso database tools
-tap "libsql/sqld"
-tap "yakitrak/yakitrak"                # Tap for yakitrak tools
-tap "simenandre/tools"                 # Tap for Simen Andre's tools
-
-# Applications
-cask "spotify"                         # Spotify music streaming
-brew "neovim"                          # Hyperextensible Vim-based text editor
-cask "slack"                           # Slack messaging app
-cask "sonos"                           # Sonos controller app
-brew "tmux"                            # Terminal multiplexer
-cask "figma"                           # Figma design tool
-cask "discord"                         # Discord chat and voice app
-cask "grammarly"                       # Grammarly writing assistant
-cask "microsoft-remote-desktop"        # Microsoft Remote Desktop app
-cask "postico"                         # PostgreSQL GUI client
-cask "cyberduck"                       # FTP and cloud storage browser
-cask "adobe-creative-cloud"            # Adobe Creative Cloud
-# TODO: Figure out how to handle 1password when it updates itself
-# cask "1password"                       # 1Password password manager
-cask "1password-cli"                   # 1Password command-line tool
-cask "protonvpn"                       # ProtonVPN client
-cask "openvpn-connect"                 # OpenVPN client
-cask "raycast"                         # Command launcher
-cask "rectangle"                       # Window management app
-cask "google-chrome"                   # Google Chrome browser
-cask "google-drive"                    # Google Drive
-cask "google-drive-file-stream"        # Google Drive for desktop
-cask "karabiner-elements"              # Keyboard customizer
-cask "postman"                         # API platform
-cask "ghostty"                         # Modern terminal emulator
-cask "proton-mail"                     # ProtonMail client
-cask "claude"
-
-# Mas
-brew "mas"                             # Mac App Store command-line interface
-mas "Outline", id: 1356178125          # Outline VPN
-mas "Remote Desktop", id: 409907375    # Microsoft Remote Desktop application
-
-# Shells and Shell Utilities
-brew "zsh"                             # Z shell
-brew "bash"                            # Modern version of Bash
-brew "bash-completion"                 # Bash completion
-brew "ghq"                             # Manage remote repository clones
-brew "moreutils"                       # Collection of additional Unix utilities
-
-# GNU Tools
-brew "findutils"                       # GNU `find`, `locate`, `updatedb`, and `xargs`, `g`-prefixed.
-brew "gnu-sed"                         # GNU `sed`, overwriting the built-in `sed`.
-brew "grep"                            # More recent version of macOS `grep`
-brew "stow"
-
-# Networking Tools
-brew "wget"                            # `wget` with IRI support.
-brew "openssh"                         # OpenSSH utilities
-brew "nmap"                            # Network mapper
-
-# Security and Encryption
-brew "gnupg"                           # GnuPG to enable PGP-signing commits.
-brew "git-secret"                      # Bash tool to store encrypted secrets in a Git repository
-brew "ssh-copy-id"                     # Add SSH key to a server's authorized_keys
-
-# Compression Libraries and Tools
-brew "lz4"                             # Compression library
-brew "zlib"                            # Compression library
-brew "zstd"                            # Compression library
-brew "libffi"                          # Foreign Function Interface library
-brew "p7zip"                           # File archiver with high compression ratio
-brew "pigz"                            # Parallel implementation of gzip
-brew "zopfli"                          # Compression tool
-
-# Programming Languages and Runtimes
-brew "golang"                          # Go programming language
-brew "golangci-lint"                   # Go linter
-brew "python@3.11"                     # Python 3.11
-brew "rust"                            # Rust programming language
-brew "zig"                             # Zig programming language
-brew "pkl"                             # Configuration language
-
-# Font Tools
-brew "sfnt2woff"                       # Convert TTF to WOFF
-brew "sfnt2woff-zopfli"                # Convert TTF to WOFF (with Zopfli compression)
-brew "woff2"                           # Convert TTF to WOFF2
-cask "font-symbols-only-nerd-font"     # Symbols Only Nerd Font
-cask "font-jetbrains-mono"             # JetBrains Mono font
-
-# JavaScript Runtimes and Package Managers
-brew "bun"                             # Bun JavaScript runtime
-brew "pnpm"                            # Fast, disk space efficient package manager
-brew "volta"                           # JavaScript tool manager
-brew "corepack"                        # Yarn and pnpm binary manager
-brew "deno"                            # Secure JavaScript and TypeScript runtime
-
-# REST API Clients
-brew "danielgtaylor/restish/restish"   # REST API client
-
-# Version Control
-brew "git"                             # Distributed version control system
-brew "git-lfs"                         # Git extension for versioning large files
-brew "lazygit"                         # Simple terminal UI for git commands
-brew "microplane"                      # Tool for mass refactoring
-
-# Search Tools
-brew "ripgrep"                         # Line-oriented search tool
-brew "ack"                             # Search tool like grep, optimized for programmers
-brew "fzf"                             # Command-line fuzzy finder
-
-# JSON/YAML Processing Tools
-brew "jq"                              # Command-line JSON processor
-brew "yq"                              # Command-line YAML processor
-
-# Cloud and IaC Tools
-brew "pulumi"                          # Infrastructure as code tool
-brew "crd2pulumi"                      # Generate Pulumi code from Kubernetes CRDs
-brew "kube2pulumi"                     # Generate Pulumi code from Kubernetes YAML
-brew "pulumictl"                       # Pulumi command-line tool
-brew "tf2pulumi"                       # Convert Terraform code to Pulumi
-brew "azure-cli"                       # Microsoft Azure command-line tool
-brew "kubectl"                         # Kubernetes command-line tool
-brew "helm"                            # Kubernetes package manager
-brew "cilium-cli"                      # CLI to install, manage & troubleshoot Kubernetes clusters
-cask "google-cloud-sdk"                # Google Cloud SDK
-brew "doctl"                           # DigitalOcean CLI
-brew "flyctl"                          # Fly.io CLI
-
-# Container Tools
-brew "podman"                          # Manage pods, containers, and container images
-brew "podman-compose"                  # Docker Compose replacement for Podman
-cask "docker"                          # Docker desktop
-cask "podman-desktop"                  # Podman desktop
-
-# Task Runners and Automation
-brew "go-task"                         # Task runner for Go
-brew "act"                             # Run GitHub Actions locally
-
-# Databases and Database Tools
-brew "turso"                           # Turso database command-line tool
-brew "libpq"                           # PostgreSQL C library
-brew "sqld"                            # SQL daemon
-
-# Video Meeting Applications
-cask "microsoft-teams"                 # Microsoft Teams
-cask "zoom"                            # Zoom video conferencing
-
-# Terminal Tools
-brew "pv"                              # Pipe viewer
-brew "rename"                          # Perl-powered file rename script
-brew "rlwrap"                          # Readline wrapper
-brew "tree"                            # Display directories as trees
-brew "screen"                          # Terminal multiplexer
-brew "vbindiff"                        # Visual binary diff
-brew "tmate"                           # Instant terminal sharing
-brew "asciinema"                       # Record and share terminal sessions
-brew "dasel"                           # Query and update data structures from the command line
-brew "tldr"                            # Simplified and community-driven man pages
-brew "starship"                        # Cross-shell prompt
-brew "gh"                              # GitHub CLI
-
-# HTTP and Web Servers
-brew "caddy"                           # Fast, multi-platform web server with automatic HTTPS
-brew "goreleaser"                      # Deliver Go binaries as fast and easily as possible
-
-# Specific Toolsets
-brew "whalebrew"                       # Dockerized CLI applications
-brew "gd"                              # Graphics library
-brew "ghostscript"                     # PostScript interpreter
-brew "rclone"                          # Manage cloud storage
-brew "graphviz"                        # Graph visualization software
-#
-# Obsidian
-cask "obsidian"                        # Obsidian note-taking app